Executable Biochemical Space for Specification and Analysis of Biochemical Systems

Q3 Computer Science

Electronic Notes in Theoretical Computer Science Pub Date : 2020-09-01 DOI:10.1016/j.entcs.2020.06.006

Matej Troják, David Šafránek, Luboš Brim, Jakub Šalagovič, Jan Červený

引用次数: 0

Abstract

We present the second generation of a rule-based language called Biochemical Space Language (BCSL) that combines the advantages of different approaches and thus makes an effort to overcome several problems with existing solutions. The key aspect of the language is the level of abstraction it uses, which allows scalable and compact hierarchical specification of biochemical entities. This abstraction enables unique analysis techniques to reason about properties of models written in the language on the semantic and syntactic level.

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生化系统规范与分析的可执行生化空间

我们提出了第二代基于规则的语言，称为生化空间语言(BCSL)，它结合了不同方法的优点，从而努力克服现有解决方案中的几个问题。该语言的关键方面是它使用的抽象级别，它允许对生化实体进行可扩展和紧凑的分层规范。这种抽象使独特的分析技术能够在语义和语法级别上对用语言编写的模型的属性进行推理。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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Electronic Notes in Theoretical Computer Science Computer Science-Computer Science (all)

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