Parental Polymorphism between Samba Mahsuri and False Smut Tolerant Landraces using SSR and InDel Markers

Preeti -, Lokesha R, Balakrishnan D, Bhaskar M, Gireesh C, Neeraja CN, Singh AK, Nidagundi JM, Diwan JR, Bheemanna M, Suma TC, Prasad MS, Sundaram RM, Ladhalakshmi D
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Abstract

In the present study, 868 SSR and 475 InDel markers were selected to study parental polymorphism of two different crosses between recipient parent Samba Mahsuri and false smut donor linesIC379047 and IC334233 at ICAR-Indian Institute of Rice Research, Rajendranagar, Hyderabad. Out of 1343 markers used for parental polymorphism, 100 markers were polymorphic between parental lines Samba Mahsuri and landrace IC379047 and the total polymorphism percentage recorded was 7.44%. Ninety-nine markers exhibited polymorphism between parental lines Samba Mahsuri and IC334233 and 7.37% of total polymorphism percentage was recorded between the parents. The identified polymorphic markers could be further used for QTL mapping studies in false smut resistance.
利用SSR和InDel标记分析桑巴与耐假黑穗病地方品种亲本多态性
本研究选用868个SSR标记和475个InDel标记,研究了接收亲本Samba Mahsuri与假黑穗病供体ic379047和IC334233的亲本多态性。在1343个亲本多态性标记中,有100个标记在桑巴马苏里亲本系与地方品种IC379047亲本系之间存在多态性,总多态性率为7.44%。亲本间有99个标记存在多态性,占总多态性率的7.37%。所鉴定的多态性标记可进一步用于水稻抗假黑穗病QTL定位研究。
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