The Cell Wall-Related Gene Families of Wheat (Triticum aestivum)

Abstract

Wheat crops provide 20% of calories worldwide. Cell walls function in plant growth, are part of biotic and abiotic stress resistance, and provide plant mechanical strength and adaptability. These functions factor into the productivity of wheat. The genes that produce and maintain the plant cell wall are up to 10% of the genome in many varied families. Previously, curated cell wall gene families have been published for maize and rice, two other important crop grasses. Here, 81 cell wall-related wheat gene families curated via sequence similarity to maize and rice and unique family protein motif searches are presented. A total of 4086 wheat, 1118 maize, 1036 rice, and 955 Arabidopsis genes were aligned and placed into gene family trees to present homologs for all four species. Due to hexaploidy, many wheat cell wall gene families show expected triplication of genes per family over maize, rice, and Arabidopsis. However, several families contained more wheat genes than expected. The utility of this research is demonstrated with an example from a pre-harvest sprouting study to identify specific gene families rather than the less descriptive identification available with standard bioinformatic searches.