Modelling of First- and Second-order Chemical Reactions on ARUZ – Massively-parallel FPGA-based Machine

Abstract

ARUZ (Analizator Rzeczywistych Układów Złożonych, Analyser of Real Complex Systems) is a massively parallel FPGA-based simulator located at BioNanoPark Lodz. This machine has been designed to reflect the Dynamic Lattice Liquid (DLL) algorithm in hardware. In this paper, FPGA implementation details are presented for DLL functionality extension. This extension allows to simulate simple chemical reactions of first and second order realized in a parallel approach.