Subcellular localization prediction of apoptosis proteins based on the data mining for amino acid index database

Abstract

In this work, based on the ACF model and the SVM classifier, succeeded on trials mining information that it's more effective to analyze the subcellular localization prediction of apoptosis proteins when adopting hydrophobicity property. This information is obtained in three benchmark datasets by using the ACF model and SVM to scan the AAindex database, which contains 544 kinds of amino acids. The contribution of this work is that it first did a comprehensive research on the effectiveness of the amino acid index for the subcellular localization of apoptosis proteins.