Ranking SVM for multiple kernels output combination in protein-protein interaction extraction from biomedical literature

Abstract

Knowledge about protein-protein interactions unveils the molecular mechanisms of biological processes. This paper presents a multiple kernels learning-based approach to automatically extracting protein-protein interactions from biomedical literature. Experimental evaluations show that our approach can achieve state-of-the-art performance with respect to comparable evaluations, with 64.88% F-score and 88.02% area under the receiver operating characteristics curve (AUC) on the AImed corpus.