Yuehan Zhou, Hong Liang, Jianzhi Deng, Zhenhua Luo, W. Long
{"title":"LAGE3 is a potential therapeutic target and prognostic factor in breast cancer: database mining for LAGE family members in human malignancies","authors":"Yuehan Zhou, Hong Liang, Jianzhi Deng, Zhenhua Luo, W. Long","doi":"10.1145/3395260.3395287","DOIUrl":null,"url":null,"abstract":"Breast cancer is the top cancer in women worldwide. Human L antigen (LAGE) family, are a cluster of genes that located on Chromosome X. To date, 4 members of LAGE family named LAGE1, LAGE2A, LAGE2B and LAGE3 have been reported, but their roles contributing to tumorigenesis and prognosis of breast cancer are still not clear. In the present study, we studied the expression of LAGE transcripts in an array of tumor types, compared with the normal controls using ONCOMINE database, and the corresponding expression files in a variety of cancer cell lines through CCLE analysis, along with the protein expression in normal breast tissues and breast cancer specimens from the Human Protein Atlas (HPA). Gene Expression-Based Outcome for Breast Cancer Online (GOBO) analysis was used to examine the mRNA expression in breast cancer patients with different intrinsic PAM50 subtypes. Based on Kaplan-Meier plotter, the prognostic value in breast cancer patients, was evaluated. It was found that, LAGE3 was distinctly high expressed at mRNA and protein levels in breast cancer patients when compared with normal tissues among all LAGE members. In survival analysis, low expression of LAGE3 was correlated to better survival in breast cancer patients, which revealed that expression of LAGE3 is a predictor of poor prognosis in breast cancer. In conclusion, LAGE3 is a distinct biomarker and essential prognostic factor for breast cancer.","PeriodicalId":103490,"journal":{"name":"Proceedings of the 2020 5th International Conference on Mathematics and Artificial Intelligence","volume":"43 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2020-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proceedings of the 2020 5th International Conference on Mathematics and Artificial Intelligence","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1145/3395260.3395287","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1
Abstract
Breast cancer is the top cancer in women worldwide. Human L antigen (LAGE) family, are a cluster of genes that located on Chromosome X. To date, 4 members of LAGE family named LAGE1, LAGE2A, LAGE2B and LAGE3 have been reported, but their roles contributing to tumorigenesis and prognosis of breast cancer are still not clear. In the present study, we studied the expression of LAGE transcripts in an array of tumor types, compared with the normal controls using ONCOMINE database, and the corresponding expression files in a variety of cancer cell lines through CCLE analysis, along with the protein expression in normal breast tissues and breast cancer specimens from the Human Protein Atlas (HPA). Gene Expression-Based Outcome for Breast Cancer Online (GOBO) analysis was used to examine the mRNA expression in breast cancer patients with different intrinsic PAM50 subtypes. Based on Kaplan-Meier plotter, the prognostic value in breast cancer patients, was evaluated. It was found that, LAGE3 was distinctly high expressed at mRNA and protein levels in breast cancer patients when compared with normal tissues among all LAGE members. In survival analysis, low expression of LAGE3 was correlated to better survival in breast cancer patients, which revealed that expression of LAGE3 is a predictor of poor prognosis in breast cancer. In conclusion, LAGE3 is a distinct biomarker and essential prognostic factor for breast cancer.
乳腺癌是全世界女性的头号癌症。人类L抗原(LAGE)家族是位于x染色体上的一个基因簇。迄今为止,LAGE家族的4个成员LAGE1、LAGE2A、LAGE2B和LAGE3已被报道,但它们在乳腺癌发生和预后中的作用尚不清楚。在本研究中,我们使用ONCOMINE数据库研究了LAGE转录本在一系列肿瘤类型中的表达,并与正常对照进行了比较,通过CCLE分析研究了LAGE转录本在多种癌细胞系中的表达文件,同时通过人类蛋白图谱(Human protein Atlas, HPA)研究了正常乳腺组织和乳腺癌标本中的蛋白表达。基于基因表达的乳腺癌预后在线(GOBO)分析用于检测不同内在PAM50亚型乳腺癌患者的mRNA表达。基于Kaplan-Meier绘图图,评估乳腺癌患者的预后价值。我们发现,在所有LAGE成员中,与正常组织相比,LAGE3在乳腺癌患者中的mRNA和蛋白水平均明显高表达。在生存分析中,LAGE3的低表达与乳腺癌患者更好的生存相关,这表明LAGE3的表达是乳腺癌预后不良的预测因子。总之,LAGE3是乳腺癌的一个独特的生物标志物和重要的预后因素。