B

Shang-Pen Huang, Chien-Hsiu Li, Wei-Min Chang, Yuansheng Lin
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引用次数: 0

Abstract

Although several biomarkers have been identified to predict the prognosis of lower-grade (Grade II/III) gliomas (LGGs), we still need to identify new markers to facilitate those well-known markers to obtain more accurate prognosis prediction in LGGs. Bioinformatics data from The Cancer Genome Atlas (TCGA), the Chinese Glioma Genome Atlas (CGGA), and the Cancer Cell Line Encyclopedia (CCLE) datasets were used as the research materials. In total, 34 genes associated with the HIF1A pathway were analyzed using the hierarchical method to search for the most compatible gene. The BICD cargo adaptor 1 (BICD1) gene (BICD1) was shown to be significantly correlated with The hypoxic inducible factor 1A (HIF1A) expression, the World Health Organization (WHO) grade, and IDH1 mutation status. In addition, BICD1 downregulation was significantly correlated with a higher Karnofsky performance score (KPS), IDH1/TP53/ATRX mutations, wild-type EGFR, and younger patient age in the enrolled LGG cohort. Moreover, BICD1 expression was significantly upregulated in wild-type IDH1 LGGs with EGFR mutations. Kaplan–Meier survival analysis revealed that BICD1 downregulation predicts a favorable overall survival (OS) in LGG patients, especially in those with IDH1 mutations. Intriguingly, we found a significant correlation between BICD1 downregulation and a decreased level of CD274, GSK3B, HGF, or STAT3 in LGGs. Our findings suggest that BICD1 downregulation could be a potential biomarker for a favorable prognosis
B
虽然已经确定了几种生物标志物可以预测低级别(II/III级)胶质瘤(LGGs)的预后,但我们仍然需要发现新的标志物,以促进这些已知的标志物在LGGs中获得更准确的预后预测。生物信息学数据来自The Cancer Genome Atlas (TCGA)、Chinese Glioma Genome Atlas (CGGA)和Cancer Cell Line Encyclopedia (CCLE)数据集。采用分层方法,共分析了34个与HIF1A通路相关的基因,以寻找最相容的基因。BICD货运适配器1 (BICD1)基因(BICD1)与缺氧诱导因子1A (HIF1A)表达、世界卫生组织(WHO)分级和IDH1突变状态显著相关。此外,在入选的LGG队列中,BICD1下调与较高的Karnofsky表现评分(KPS)、IDH1/TP53/ATRX突变、野生型EGFR和较年轻的患者年龄显著相关。此外,在EGFR突变的野生型IDH1 LGGs中,BICD1的表达显著上调。Kaplan-Meier生存分析显示,BICD1下调预示着LGG患者有利的总生存期(OS),尤其是IDH1突变患者。有趣的是,我们发现在LGGs中BICD1下调与CD274、GSK3B、HGF或STAT3水平降低之间存在显著相关性。我们的研究结果表明,BICD1下调可能是一个潜在的预后良好的生物标志物
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