XQuery based intelligent search system for genomic data retrieval

F. Sufi, I. Cosic, Q. Fang
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引用次数: 3

Abstract

Various biological databases are available for holding the increasing amount of genome sequences. Researchers and biologists interested in the sequence information for a particular organism can retrieve their data from these multiple sources. However, selecting the right sources, in consideration of speed and availability, for a particular task is often a very hard decision. Moreover, there are different platforms and organization of data in the biological realm, making it a hindrance for interchanging information from one platform to another. So, integration of these distributed sources, with the major industry standard, is an urgent necessity faced by the biological community. Proposed here is a system that retrieves sequence data from multiple sources depending on their speed at the time of issuing the query thereby avoiding fetching data from the sites that are facing technical difficulty or delay. Moreover, the proposed system utilises the power of XML based technology, like XQuery, XSL for compliance with the industry standard and system extensibility.
基于XQuery的基因组数据检索智能搜索系统
各种各样的生物数据库可用于保存越来越多的基因组序列。对特定生物体的序列信息感兴趣的研究人员和生物学家可以从这些多个来源检索他们的数据。然而,考虑到速度和可用性,为特定任务选择正确的源通常是一个非常困难的决定。此外,在生物领域中存在不同的平台和数据组织,这阻碍了从一个平台到另一个平台的信息交换。因此,将这些分布源与主要的行业标准进行整合,是生物界面临的迫切需要。本文提出了一种系统,该系统根据多个源在发出查询时的速度从多个源检索序列数据,从而避免从面临技术困难或延迟的站点获取数据。此外,所建议的系统利用了基于XML的技术(如XQuery、XSL)的强大功能,以符合行业标准和系统可扩展性。
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