Amplification of noisy gene expression by protein burden: An analytical approach

Iryna Zabaikina, Zhanhao Zhang, César Nieto, Pavol Bokes, Abhyudai Singh
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Abstract

The overexpression of many proteins can often have a detrimental impact on cellular growth. This expression-growth coupling leads to positive feedback - any increase of intracellular protein concentration reduces the growth rate of cell size expansion that in turn enhances the concentration via reduced dilution. We investigate how such feedback amplifies intrinsic stochasticity in gene expression to drive a skewed distribution of the protein concentration. Our research provides the analytical expression of the distribution after solving the associated Chapman-Kolmogorov equation. With these results, we quantify the enhancement of noise/skewness as a function of expression-growth coupling. This analysis has important implications for the expression of stress factors, where high levels provide protection from stress, but come at the cost of reduced cellular proliferation. Finally, we connect these analytical results to the case of an actively degraded gene product, where the degradation machinery is working close to saturation.
蛋白负荷扩增噪声基因表达:一种分析方法
许多蛋白质的过度表达通常会对细胞生长产生有害影响。这种表达-生长耦合导致正反馈-细胞内蛋白质浓度的任何增加都会降低细胞大小扩张的生长速率,从而通过减少稀释来提高浓度。我们研究了这种反馈如何放大基因表达的内在随机性,以驱动蛋白质浓度的倾斜分布。我们的研究提供了求解相关Chapman-Kolmogorov方程后的分布解析表达式。根据这些结果,我们将噪声/偏度的增强量化为表达式-生长耦合的函数。这一分析对应激因子的表达具有重要意义,应激因子的高水平提供了对应激的保护,但以减少细胞增殖为代价。最后,我们将这些分析结果与主动降解基因产物的情况联系起来,其中降解机制的工作接近饱和。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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