Interactive Tools (IT) in Galaxy Combining Synchronous and Asynchronous Workflows

Tunc Kayikcioglu, Sanjay Kumar Srikakulam, Wolfgang Maier, Björn A. Grüning
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Abstract

Galaxy [1] is a GUI-based scientific data management and analysis platform that aims to expand the target audience of scientific computing to scientists without advanced computer literacy or access to computing infrastructure. During the operation of a typical asynchronous workflow, the interaction of the user triggers a job submission to a hosted computing system, the results of which are then reported back to the user upon completion of the task. However, such an asynchronous interaction scheme is not compatible with scientific software that require user interaction during the execution itself (synchronous), e.g. many data visualisation software. Interactive Tools on Galaxy (IT; [2]) leverage tool and job components of Galaxy by taking advantage of the latest containerization solutions to provide access to interactive executable software. With ITs, Galaxy is enabling the more and more common use-case of asynchronous workflows while keeping the possibility to bridge at any time to synchronous workflows and reusing all the other Galaxy data management features.
结合同步和异步工作流的银河交互式工具(IT)
Galaxy[1]是一个基于gui的科学数据管理和分析平台,旨在将科学计算的目标受众扩展到没有高级计算机知识或无法访问计算基础设施的科学家。在典型的异步工作流操作期间,用户的交互触发向托管计算系统提交作业,然后在任务完成时将其结果报告给用户。然而,这种异步交互方案并不兼容那些在执行过程中需要用户交互的科学软件(同步),例如许多数据可视化软件。银河资讯科技互动工具;[2])通过利用最新的集装箱化解决方案来提供对交互式可执行软件的访问,从而利用Galaxy的工具和作业组件。有了ITs, Galaxy正在支持异步工作流的越来越常见的用例,同时保持随时连接到同步工作流和重用所有其他Galaxy数据管理功能的可能性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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