Xinwei Chai, Tony Ribeiro, Morgan Magnin, Olivier Roux , Katsumi Inoue
{"title":"Static Analysis and Stochastic Search for Reachability Problem","authors":"Xinwei Chai, Tony Ribeiro, Morgan Magnin, Olivier Roux , Katsumi Inoue","doi":"10.1016/j.entcs.2020.06.008","DOIUrl":null,"url":null,"abstract":"<div><p>This paper focuses on a major improvement on the analysis of reachability properties in large-scale dynamical biological models. To tackle such models, where classical model checkers fail due to state space explosion led by exhaustive search. Alternative static analysis approaches have been proposed, but they may also fail in certain cases due to non-exhaustive search. In this paper, we introduce a hybrid approach ASPReach, which combines static analysis and stochastic search to break the limits of both approaches. We tackle this issue on a modeling framework we recently introduced, Asynchronous Binary Automata Network (ABAN). We show that ASPReach is able to analyze efficiently some reachability properties which could not be solved by existing methods. We studied also various cases from biological literature, emphasizing the merits of our approach in terms of conclusiveness and performance.</p></div>","PeriodicalId":38770,"journal":{"name":"Electronic Notes in Theoretical Computer Science","volume":"350 ","pages":"Pages 139-158"},"PeriodicalIF":0.0000,"publicationDate":"2020-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.entcs.2020.06.008","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Electronic Notes in Theoretical Computer Science","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1571066120300360","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Computer Science","Score":null,"Total":0}
引用次数: 1
Abstract
This paper focuses on a major improvement on the analysis of reachability properties in large-scale dynamical biological models. To tackle such models, where classical model checkers fail due to state space explosion led by exhaustive search. Alternative static analysis approaches have been proposed, but they may also fail in certain cases due to non-exhaustive search. In this paper, we introduce a hybrid approach ASPReach, which combines static analysis and stochastic search to break the limits of both approaches. We tackle this issue on a modeling framework we recently introduced, Asynchronous Binary Automata Network (ABAN). We show that ASPReach is able to analyze efficiently some reachability properties which could not be solved by existing methods. We studied also various cases from biological literature, emphasizing the merits of our approach in terms of conclusiveness and performance.
期刊介绍:
ENTCS is a venue for the rapid electronic publication of the proceedings of conferences, of lecture notes, monographs and other similar material for which quick publication and the availability on the electronic media is appropriate. Organizers of conferences whose proceedings appear in ENTCS, and authors of other material appearing as a volume in the series are allowed to make hard copies of the relevant volume for limited distribution. For example, conference proceedings may be distributed to participants at the meeting, and lecture notes can be distributed to those taking a course based on the material in the volume.